The variation in number of samples could mean a wrong frequency. If the Flipper listens at 38 KHz (fixed, limited by hardware) and the sender sends at for example 57 KHz, you can see something, but mostly garbage.
But maybe the samples are make sense. The Flipper is specialized for CIR (Consumer IR), used by remotes for TV, and Home Entertainment.
If you get something useable from your remote, I assume it is something Wiegand
, maybe with rolling code. Easy to test: push the button too often outside the operating range and the remote should be desynced and stop to work.